PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01796.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 165aa    MW: 17706.7 Da    PI: 6.5351
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01796.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.21.3e-5426121196
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdrflPian++rimkk+lP+n+ki+kdak+tvqecvsefi+f+tseas+kcq+ekrktingddll+a+atlGfedy++plkvyl++yrel
  Migut.F01796.1.p  26 VREQDRFLPIANIGRIMKKALPTNGKIGKDAKDTVQECVSEFIGFITSEASNKCQKEKRKTINGDDLLYAIATLGFEDYIAPLKVYLARYREL 118
                       69******************************************************************************************* PP

             NF-YB  94 ege 96 
                       eg+
  Migut.F01796.1.p 119 EGD 121
                       *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.8E-5024143IPR009072Histone-fold
SuperFamilySSF471133.42E-3829141IPR009072Histone-fold
PfamPF008081.2E-253296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.7E-186078No hitNo description
PRINTSPR006152.7E-187997No hitNo description
PRINTSPR006152.7E-1898116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MADSPGGDGS HEGGGGGGDR SPRLGVREQD RFLPIANIGR IMKKALPTNG KIGKDAKDTV  60
QECVSEFIGF ITSEASNKCQ KEKRKTINGD DLLYAIATLG FEDYIAPLKV YLARYRELEG  120
DIKGPGKGAD GSSKKETRQV SDSQFVHQGS VSQGFSYSNP EIEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4626117192Transcription factor HapC (Eurofung)
4g92_B8e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834891.11e-118PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_012834892.11e-118PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK41e-71NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0N6X6V57e-90A0A0N6X6V5_SALMI; Transcription factor NFYB
STRINGGLYMA03G33490.11e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-67nuclear factor Y, subunit B10